Ingenuity supports gene expression analysis of PCR data in both iReport and IPA.
iReport for Real-Time PCR
Working in partnership with Life Technologies, Ingenuity iReport for Real-time PCR has been designed for rapid upload and automatic mapping of several TaqMan® Gene Expression Assay formats including TaqMan® Array Card and OpenArray® file types.
IPA natively supports upload of a differential gene expression lists. PCR instruments produce a variety of formats depending on the manufacture. Many file formats include Gene IDs and CT values for expression. The CT values can be easily converted into a format that IPA understands.